{"id":9993,"date":"2018-12-17T10:52:53","date_gmt":"2018-12-17T15:52:53","guid":{"rendered":"https:\/\/biology.mit.edu\/?p=9993"},"modified":"2018-12-17T10:52:53","modified_gmt":"2018-12-17T15:52:53","slug":"biologists-discover-an-unusual-hallmark-of-aging-in-neurons","status":"publish","type":"post","link":"https:\/\/biology.mit.edu\/biologists-discover-an-unusual-hallmark-of-aging-in-neurons\/","title":{"rendered":"Biologists discover an unusual hallmark of aging in neurons"},"content":{"rendered":"

As we age, neurons in our brains can become damaged by free radicals. MIT biologists have now discovered that this type of damage, known as oxidative stress, produces an unusual pileup of short snippets of RNA in some neurons.<\/p>\n

This RNA buildup, which the researchers believe may be a marker of neurodegenerative diseases, can reduce protein production. The researchers observed this phenomenon in both mouse and human brains, especially in a part of the brain called the striatum \u2014 a site involved in diseases such as Parkinson\u2019s and Huntington\u2019s.<\/p>\n

\u201cThe brain is very metabolically active, and over time, that causes oxidative damage, but it affects some neurons more than others,\u201d says Christopher Burge, an MIT professor of biology. \u201cThis phenomenon appears to be a previously unrecognized consequence of oxidative stress, which impacts hundreds of genes and may influence translation and RNA regulation globally.\u201d<\/p>\n

Burge and Myriam Heiman, the Latham Family Career Development Associate Professor of Brain and Cognitive Sciences, are the senior authors of the paper, which appears in the Nov. 27 issue of\u00a0Cell Reports<\/em>. Peter Sudmant, a former MIT postdoc, is the lead author of the paper, and postdoc Hyeseung Lee and former postdoc Daniel Dominguez are also authors.<\/p>\n

A mysterious finding<\/strong><\/p>\n

For this study, the researchers used a technique developed by Heiman that allows them to isolate and sequence messenger RNA from specific types of cells. Messenger RNA carries protein-building instructions to cell organelles called ribosomes, which read the mRNA and translate the instructions into proteins by stringing together amino acids in the correct sequence.<\/p>\n

Heiman\u2019s technique involves tagging ribosomes from a specific type of cells with green fluorescent protein, so that when a tissue sample is analyzed, researchers can use the fluorescent tag to isolate and sequence RNA from only those cells. This allows them to determine which proteins are being produced by different types of cells.<\/p>\n

\u201cThis is particularly useful in the nervous system where you\u2019ve got different types of neurons and glia closely intertwined together, if you want to isolate the mRNAs from one particular cell type,\u201d Burge says.<\/p>\n

In separate groups of mice, the researchers tagged ribosomes from either D1 or D2 spiny projection neurons, which make up 95 percent of the neurons found in the striatum. They labeled these cells in younger mice (6 weeks old) and 2-year-old mice, which are roughly equivalent to humans in their 70s or 80s.<\/p>\n

The researchers had planned to look for gene expression differences between those two cell types, and to explore how they were affected by age. \u201cThese two types of neurons are implicated in several neurodegenerative diseases that are aging-related, so it is important to understand how normal aging changes their cellular and molecular properties,\u201d says Heiman,\u00a0who is a member of MIT\u2019s Picower Institute for Learning and Memory and the Broad Institute of MIT and Harvard.<\/p>\n

To the researchers\u2019 surprise, a mysterious result emerged \u2014 in D1 neurons from aged mice (but not neurons from young mice or D2 neurons from aged mice), they found hundreds of genes that expressed only a short fragment of the original mRNA sequence. These snippets, known as 3\u2019 untranslated regions (UTRs), were stuck to ribosomes, preventing the ribosomes from assembling normal proteins. \u201cWhile these RNAs have been observed before, the magnitude and age-associated cell-type specificity was really unprecedented,\u201d says Sudmant.<\/p>\n

The 3\u2019 UTR snippets appeared to originate from about 400 genes with a wide variety of functions. Meanwhile, many other genes were totally unaffected.<\/p>\n

\u201cThere are some genes that are completely normal, even in aged D1 neurons. There\u2019s a gene-specific aspect to this phenomenon that is quite interesting and mysterious,\u201d Burge says.<\/p>\n

The findings led the researchers to explore a possible role for oxidative stress in this 3\u2019 UTR accumulation. Neurons burn a great deal of energy, which can produce free radicals as byproducts. Unlike many other cell types, neurons do not get replaced, so they are believed to be susceptible to accumulated damage from these radicals over time.<\/p>\n

The MIT team found that the activation of oxidative stress response pathways was higher in D1 neurons compared to D2 neurons, suggesting that they are indeed undergoing more oxidative damage. The researchers propose a model for the production of isolated 3′ UTRs involving an enzyme called ABCE1, which normally separates ribosomes from mRNA after translation is finished. This enzyme contains iron-sulfur clusters that can be damaged by free radicals, making it less effective at removing ribosomes, which then get stuck on the mRNA. This leads to cleavage of the RNA by a mechanism that operates upstream of stalled ribosomes.<\/p>\n

\u201cSending neural signals takes a lot of energy,\u201d Burge says. \u201cOver time, that causes oxidative damage, and in our model one of the proteins that eventually gets damaged is ABCE1, and that triggers the production of 3\u2019 UTRs.\u201d<\/p>\n

RNA buildup<\/strong><\/p>\n

The researchers also found the same accumulation in most parts of the human brain, including the frontal cortex, which is very metabolically active. They did not see it in most other types of human tissue, with the exception of liver tissue, which is exposed to high levels of potentially toxic molecules.<\/p>\n

In human brain tissue, the researchers found that the amount of 3\u2019 UTRs gradually increased with age, which fits their proposed model of gradual damage by oxidative stress. The researchers\u2019 findings and model suggest that the production of these 3′ UTRs involves the destruction of normal mRNAs, reducing the amount of protein produced from the affected genes. \u00a0This buildup of 3′ UTRs with ribosomes stuck to them can also block ribosomes from producing other proteins.<\/p>\n

It remains to be seen exactly what effect this would have on those neurons, Burge says, but it is possible that this kind of cellular damage could combine with genetic and environmental factors to produce a general decline in cognitive ability or even neurodegenerative conditions such as Parkinson\u2019s disease. In future studies, the researchers hope to further explore the causes and consequences of the accumulation of 3\u2019 UTRs.<\/p>\n

The research was funded by the National Institutes of Health and the JPB Foundation.<\/p>\n","protected":false},"excerpt":{"rendered":"

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